PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.3288s0204.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family SRS
Protein Properties Length: 345aa    MW: 38505.9 Da    PI: 7.1523
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.3288s0204.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702228.89.7e-711152792154
               DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.........kskk 82 
                          r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++++s++++++kr re          +   
  Bostr.3288s0204.1.p 115 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSTSSRETQNTKRLREAsggdhnddhSGGG 204
                          7899************************************************************99888888888877777776666677 PP

               DUF702  83 qsalsstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
                           sal++t++ +a+s++ le+s+ lP+ev+s+avfrcvrvss+++  +++e+aYqtav+igGhvfkGiLydqG+++
  Bostr.3288s0204.1.p 205 GSALANTRVMNANSNSGLEVSQhLPPEVNSPAVFRCVRVSSIEEdeDDQEYAYQTAVNIGGHVFKGILYDQGPDQ 279
                          899**************998876*******************98535567***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.4E-64118278IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.1E-28120162IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.5E-26227277IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MAGFFYLGGR DNNNKQDHHQ VDKDHHHQDK SNYLYLYKDE IYNNNKGFEI WPPQYFQQQE  60
HQQQPQQQHA STPANFYSFG MVPSGSSSNN NNNRSRSLYF NVVSDHEPGG FTVTRQGGMN  120
CQDCGNQAKK DCPHMRCRTC CKSRGFHCQT HVKSTWVPAA KRRERLAQLA SLQHHSTSSR  180
ETQNTKRLRE ASGGDHNDDH SGGGGSALAN TRVMNANSNS GLEVSQHLPP EVNSPAVFRC  240
VRVSSIEEDE DDQEYAYQTA VNIGGHVFKG ILYDQGPDQN HHHHHHDHLN LLASTATTTN  300
VEETATKTVA GNNNNGLMLD SSSLYPAQLN SFIAGTPFFT PPRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8006200.0AY800620.1 Arabidopsis thaliana clone H0000001204 hypothetical protein (AT1G75520) mRNA, complete cds.
GenBankAY9247300.0AY924730.1 Arabidopsis thaliana hypothetical protein (At1g75520) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_177684.10.0SHI-related sequence 5
SwissprotQ9LQZ50.0SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLD7KSQ40.0D7KSQ4_ARALL; Putative uncharacterized protein
STRINGAT1G75520.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-162SHI-related sequence 5